SCnorm

DOI: 10.18129/B9.bioc.SCnorm    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see SCnorm.

Normalization of single cell RNA-seq data

Bioconductor version: 3.7

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SCnorm")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")

 

PDF	R Script	SCnorm Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Normalization, RNASeq, SingleCell, Software
Version	1.2.1
License	GPL (>= 2)
Depends	R (>= 3.4.0)
Imports	stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, SingleCellExperiment, SummarizedExperiment, S4Vectors, ggplot2, forcats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL	https://github.com/rhondabacher/SCnorm
BugReports	https://github.com/rhondabacher/SCnorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SCnorm_1.2.1.tar.gz
Windows Binary	SCnorm_1.2.1.zip
Mac OS X 10.11 (El Capitan)	SCnorm_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SCnorm
Package Short Url	http://bioconductor.org/packages/SCnorm/
Package Downloads Report	Download Stats