RamiGO

DOI: 10.18129/B9.bioc.RamiGO    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RamiGO.

AmiGO visualize R interface

Bioconductor version: 3.7

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RamiGO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RamiGO")

 

PDF	R Script	RamiGO: An Introduction (HowTo)
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	1.28.0
In Bioconductor since	BioC 2.9 (R-2.14) (7 years)
License	Artistic-2.0
Depends	gsubfn, methods
Imports	igraph, RCurl, png, graph
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RamiGO_1.28.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/RamiGO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RamiGO
Package Short Url	http://bioconductor.org/packages/RamiGO/
Package Downloads Report	Download Stats