MapFilterProbe-class {waveTiling} | R Documentation |
class to store probe information after remapping and/or filtering of probes.
## Accessors getChromosome(object) getFilteredIndices(object) getPosition(object) getStrand(object)
object |
An instance of |
Objects can be created by calls of the form new("mapFilterProbe", filteredIndices, chromosome, position, strand)
.
filteredIndices
:Object of class "vector"
~~
chromosome
:Object of class "vector"
~~
position
:Object of class "vector"
~~
strand
:Object of class "vector"
~~
signature(object = "MapFilterProbe")
: ...
signature(object = "MapFilterProbe")
: ...
signature(object = "MapFilterProbe")
: ...
signature(object = "MapFilterProbe")
: ...
signature(.Object = "MapFilterProbe")
: ...
signature(object = "MapFilterProbe")
: ...
signature(object = "MapFilterProbe")
: ...
In the following code snippets, x
is a MapFilterProbe object.
getChromosome(x): Extract the chromosome identifiers.
getFilteredIndices(x): Extract the filtered probe indices.
getPosition(x): Extract the genomic position of the filtered probes.
getStrand(x): Extract the strand orientation info for the filtered probes.
Kristof De Beuf <kristof.debeuf@ugent.be>
showClass("MapFilterProbe") library(waveTilingData) data(leafdevMapAndFilterTAIR9) tt1 <- getChromosome(leafdevMapAndFilterTAIR9) tt2 <- getFilteredIndices(leafdevMapAndFilterTAIR9) tt3 <- getPosition(leafdevMapAndFilterTAIR9) tt4 <- getStrand(leafdevMapAndFilterTAIR9)