KRAScounts {twoddpcr} | R Documentation |
A data frame of droplet counts using the standard
Cluster
classification from KRASdata
. Each row
corresponds to a well/sample and the columns PP
, PN
, NP
and NN
show how many droplets were in each cluster. The remaining
rows were calculated from the counts figures except for the
InputAmount
column.
KRAScountsWellCol
is the same data frame but has
a Well
column instead of named rows.
KRAScountsQS
is a data frame imported from a CSV created
by Bio-Rad's QuantaSoft.
data(KRAScounts) data(KRAScountsWellCol) data(KRAScountsQS)
A data frame where each row corresponds to a well/sample.
The data frame was created by:
krasPlate <- ddpcrPlate(wells=KRASdata) KRAScounts <- plateSummary(krasPlate, cMethod="Cluster") onesVector <- c(1, 1, 1) runAmount <- c(64 * onesVector, 16 * onesVector, 4 * onesVector, onesVector) KRAScounts$InputAmount <- runAmount KRAScountsWellCol <- KRAScounts KRAScountsWellCol$Well <- rownames(KRAScounts) KRAScountsWellCol <- KRAScountsWellCol[, c(18,1:17)] rownames(KRAScountsWellCol) <- NULL
A data frame.
From the KRASdata
dataset created by Mahmood Ayub,
mahmood.ayub@cruk.manchester.ac.uk