plotRegion {ssviz} | R Documentation |
Plots the read density given a chromosome region.
plotRegion(bamlist, region, howsmooth = 2, ncounts = NULL, samplenames = NULL)
bamlist |
An object of type list, giving a list of bam files. If you only have 1 file, use |
region |
An object of type character defining the region to plot. Eg. |
howsmooth |
Numeric value controlling smoothness of the plot. |
ncounts |
Total number of reads for plot normalization. |
samplenames |
Sample names |
Returns the x and y components of the region's reads and plots the density.
Diana H.P. Low
data(ssviz) region<-'chr1:3015526-3080526' plotRegion(list(ctrlbam), region=region)