plotDistro {ssviz} | R Documentation |
Plots distribution of reads in the bam file based on length, direction (strand) or location (rname)
plotDistro(bamlist, type = "qwidth", samplenames = NULL, unique = FALSE, ncounts = NULL, norm = FALSE, yname = "Counts per million")
bamlist |
An object of type list, giving a list of bam files. If you only have 1 file, use |
type |
An object of type character. Can be |
samplenames |
Labels for the plot. |
unique |
Logical value to use unique reads ( |
ncounts |
Number of total counts in the bam file, used if |
norm |
Logical value to determine if plot will be normalised. |
yname |
y axis label. |
Diana H.P. Low
data(ssviz) plotDistro(list(ctrlbam))