conditions {spliceR} | R Documentation |
Returns samples/condictions of an SpliceRList or an CuffSet object.
conditions(object)
object |
a |
This helper function returns the "conditions" slot of a SpliceRList
, or the "sample" slot of a CuffSet
.
A character
vector, giving the samples/conditions.
Kristoffer Vitting-Seerup, Johannes Waage
Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.
#Load cufflinks example data cuffDB <- prepareCuffExample() conditions(cuffDB) #Generate SpliceRList from cufflinks data cuffDB_spliceR <- prepareCuff(cuffDB) conditions(cuffDB_spliceR)