transcripts {spliceR} | R Documentation |
Returns the transcript or exon GRanges object from a SpliceRList object.
transcripts(transcriptData) exons(transcriptData)
transcriptData |
a |
These helper functions returns either the "transcript_features" or "exon_features" object of a SpliceRList object.
A GRanges
object. See SpliceRList
for a full description of the contents of a SpliceRList.
Kristoffer Vitting-Seerup, Johannes Waage
Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.
#Load cufflinks example data cuffDB <- prepareCuffExample() #Generate SpliceRList from cufflinks data cuffDB_spliceR <- prepareCuff(cuffDB) myTranscripts <- transcripts(cuffDB_spliceR) myExons <- exons(cuffDB_spliceR)