singscoringOneGS {singscore} | R Documentation |
scoring single gene set signature when direction of gene set is unknown
singscoringOneGS(rankData, upSet, subSamples = NULL, centerScore = TRUE, dispersionFun = mad)
rankData |
A matrix, ranked gene expression matrix data |
upSet |
A GeneSet object, up regulated gene set |
subSamples |
A character or vector of sample labels/indices that will be used to subset the rankData matrix.All samples will be scored by default. |
centerScore |
A Boolean, specifying whether scores should be centred |
dispersionFun |
A character, dispersion function with default as 'mad' |
downSet |
A GeneSet object, down regulated gene set |
A data.frame consists of scores and dispersions for all samples