summarizeTable {singleCellTK} | R Documentation |
Creates a table of summary metrics from an input SCtkExperiment.
summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)
inSCE |
Input SCtkExperiment object. Required |
useAssay |
Indicate which assay to summarize. Default is "counts" |
expressionCutoff |
Count number of samples with fewer than expressionCutoff genes. The default is 1700. |
A data.frame object of summary metrics.
data("mouseBrainSubsetSCE") summarizeTable(mouseBrainSubsetSCE)