cisEffectTable {sigaR} | R Documentation |
Function to display the results of cisEffectTest
-function in a table-format.
Table may be restricted to a specified number of genes and sorted by relevant statistics.
cisEffectTable(testRes, number=10, sort.by=NULL)
testRes |
Object of class |
number |
Number of genes whose results are to be included in the table. |
sort.by |
|
Wessel N. van Wieringen: w.vanwieringen@vumc.nl
Van Wieringen, W.N., Van de Wiel, M.A. (2009), "Non-parametric testing for DNA copy number induced differential mRNA gene expression", Biometrics, 65(1), 19-29.
cisEffectTest
# load data data(pollackCN16) data(pollackGE16) # test cis-effect of DNA copy number on gene expression levels cisRes <- cisEffectTest(pollackCN16, pollackGE16, 1:nrow(pollackGE16), 1, nPerm=25) # display top results cisEffectTable(cisRes, number=10, sort.by="R2")