cghCall2order {sigaR} | R Documentation |
Orders the features within a cghCall
-object in accordance with their genomic order.
cghCall2order(CNdata, chr, bpstart, verbose=TRUE)
CNdata |
Object of class |
chr |
Column in the slot |
bpstart |
Column in the slot |
verbose |
Logical indicator: should intermediate output be printed on the screen? |
Object of class cghCall
, now genomically ordered.
Wessel N. van Wieringen: w.vanwieringen@vumc.nl
Van de Wiel, M.A., Kim, K.I., Vosse, S.J., Van Wieringen, W.N., Wilting, S.M. , Ylstra, B. (2007), "CGHcall: an algorithm for calling aberrations for multiple array CGH tumor profiles", Bioinformatics, 23, 892-894.
# load data data(pollackCN16) # order the copy number data genomically pollackCN16 <- cghCall2order(pollackCN16, 1, 2)