seqbias.load {seqbias} | R Documentation |
Loads a seqbias model from a file written with 'seqbias.save'.
seqbias.load(ref_fn, model_fn)
ref_fn |
filename of a reference sequence against which the reads are aligned in FASTA format. |
model_fn |
filename of a saved seqbias model |
A large seqbias model can take some time (several minutes) to fit. It is often preferable to do this just once. This function load the model from a file in YAML format, having been written with 'seqbias.save'.
A seqbias class.
Daniel Jones dcjones@cs.washington.edu
reads_fn <- system.file( "extra/example.bam", package = "seqbias" ) ref_fn <- system.file( "extra/example.fa", package = "seqbias" ) sb <- seqbias.fit( ref_fn, reads_fn ) seqbias.save( sb, "my_seqbias_model.yml" ) # load sometime later sb <- seqbias.load( ref_fn, "my_seqbias_model.yml" )