seqbias.save {seqbias} | R Documentation |
Writes to a seqbias model to a file suitable to loaded with 'seqbias.load'
seqbias.save(sb, fn)
sb |
A seqbias class created with 'seqbias.fit' or 'seqbias.load' |
fn |
A file name to write the model to |
A large seqbias model can take some time (several minutes) to fit. It is often preferable to do this just once. This function writes the model to a file in YAML format, suitable to be read with 'seqbias.load'.
Daniel Jones dcjones@cs.washington.edu
reads_fn <- system.file( "extra/example.bam", package = "seqbias" ) ref_fn <- system.file( "extra/example.fa", package = "seqbias" ) sb <- seqbias.fit( ref_fn, reads_fn ) seqbias.save( sb, "my_seqbias_model.yml" ) # load sometime later sb <- seqbias.load( ref_fn, "my_seqbias_model.yml" )