repMask {scmeth} | R Documentation |
Provides Coverage metrics in the repeat masker region
repMask(bs, organism, genome)
bs |
bsseq object |
organism |
scientific name of the organism of interest, e.g. Mmusculus or Hsapiens |
genome |
reference alignment, i.e. mm10 or hg38 |
Data frame with sample name and coverage in repeat masker regions
library(BSgenome.Mmusculus.UCSC.mm10) load(system.file("extdata",'bsObject.rda',package='scmeth')) repMask(bs,Mmusculus,'mm10')