export3Cseq2bedGraph {r3Cseq}R Documentation

export interaction regions to the 'bedGraph' format

Description

export interaction regions from RagedData to the bedGraph format, which suitable for uploading to the UCSC genome browser

Usage

export3Cseq2bedGraph(object,datatype=c("rpm","read_count"))

Arguments

object

r3Cseq object, The object might contain the interaction regions generated by function getInteractions

datatype

read_count : read count per restriction fragment rpm : normalized read per million per restriction fragment

Value

The text file in 'bedGraph' format

Author(s)

S. Thongjuea

See Also

exportInteractions2text

Examples

#See the vignette	

[Package r3Cseq version 1.26.0 Index]