getReadCountPerWindow {r3Cseq} | R Documentation |
Counts the number of reads from 3C-Seq data per each window size
getReadCountPerWindow(object,windowSize=5e3,nFragmentExcludedReadsNearViewpoint=2,mode=c("non-overlapping", "overlapping"))
object |
r3Cseq object |
windowSize |
Numeric. non-overlapping window size for counting reads (default=5e3) |
nFragmentExcludedReadsNearViewpoint |
Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments will be removed from the analysis (default=2) |
mode |
character. The window-based modes analysis (default="non-overlapping") |
The RangedData represents the number of reads per each window size
S. Thongjuea
getReadCountPerRestrictionFragment,
#See the vignette