proteinGroup {proteoQC} | R Documentation |
Protein inference
proteinGroup(file = NULL, db = "", pepColName = "peptide", proColName = "protein", spectrumColName = "index", proSep = ";", outfile = NULL, xmx = 1)
file |
A file containing the information of peptides to proteins. |
db |
A protein database of fasta format. |
pepColName |
The column name of peptide sequence. |
proColName |
The column name of protein ID. |
spectrumColName |
The column name of spectrum index. |
proSep |
The separator of protein ID, default is "". |
outfile |
The output file name of protein group result. |
xmx |
JAVA -Xm |
Bo Wen wenbo@genomics.cn
pep.zip <- system.file("extdata/pep.zip", package = "proteoQC") unzip(pep.zip) proteinGroup(file = "pep.txt", outfile = "pg.txt")