joinSegmentNeighbours {methylKit}R Documentation

Join directly neighbouring segments produced by methSeg

Description

Segmentation and clustering are two distinct steps in methSeg(), leading to adjacent segments of the same class. This leads to a bias segment length distributions, which is removed by joining those neighbours.

Usage

joinSegmentNeighbours(res)

Arguments

res

A GRanges object with segment classification and information prudoced by methSeg

Value

A GRanges object with segment classification and information.

See Also

methSeg


[Package methylKit version 1.6.3 Index]