inflateMethylome {methimpute} | R Documentation |
Inflate an imported methylation extractor file to contain all cytosine positions. This is useful to obtain a full methylome, including non-covered cytosines, because most methylation extractor programs only report covered cytosines.
inflateMethylome(methylome, methylome.full)
methylome |
A |
methylome.full |
A |
The methylome.full
object with added metadata column 'counts'.
## Get an example file in BSSeeker format file <- system.file("extdata","arabidopsis_bsseeker.txt.gz", package="methimpute") bsseeker.data <- importBSSeeker(file) bsseeker.data ## Inflate to full methylome (including non-covered sites) data(arabidopsis_toydata) full.methylome <- inflateMethylome(bsseeker.data, arabidopsis_toydata) full.methylome