normalizeMethylation.ssn {lumi} | R Documentation |
Shift and scaling normalization of Illumina Infinium methylation data at probe level
normalizeMethylation.ssn(methyLumiM, separateColor = FALSE)
methyLumiM |
a MethyLumiM object includes Illumina Infinium methylation data |
separateColor |
determine whether separately normalize two color channels |
Return an object (same class as input methyLumiM) with updated "methylated" and "unmethylated" data matrix after background level adjustment.
Pan DU
See Also lumiMethyN
, and normalizeMethylation.quantile
data(example.lumiMethy) lumiMethy.norm = normalizeMethylation.ssn(example.lumiMethy)