getWordcloud {loci2path}R Documentation

Plot word cloud using frequent terms of pathways and genes

Description

This function draw the enrichment heatmap using wordcloud package.

Usage

getWordcloud(res, ...)

## S4 method for signature 'loci2pathResult'
getWordcloud(res, min.freq.tissue = 5,
  min.freq.gset = 5, max.words = 50)

Arguments

res

query result from function query.egset.list()

...

additional params

min.freq.tissue

minimum frequency of tissue/cell to be plotted in the word cloud

min.freq.gset

minimum frequency of geneset to be plotted in the word cloud

max.words

maximum words to be generated

Value

empty

Examples

result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
getWordcloud(result, min.freq.tissue=2, min.freq.gset=1)

[Package loci2path version 1.0.0 Index]