getPathDescription {loci2path}R Documentation

Extract description for enriched pathways from query result and geneSet object

Description

This function extracts the pathway description from geneSet object.

Usage

getPathDescription(res, ...)

## S4 method for signature 'loci2pathResult'
getPathDescription(res, geneset)

Arguments

res

query result from function query.egset.list()

...

additional params

geneset

A geneSet object

Value

a vector of gene set description from geneSet description slot

Examples

result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
path.des <- getPathDescription(result, biocarta)

[Package loci2path version 1.0.0 Index]