iSEE-pkg {iSEE}R Documentation

iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer

Description

iSEE is a Bioconductor package that provides an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results, e.g., from principal components analysis (PCA) or t-distributed stochastic neighbour embedding (t-SNE)

Author(s)

Aaron Lun alun@wehi.edu.au

Charlotte Soneson charlotte.soneson@uzh.ch

Federico Marini marinif@uni-mainz.de

Kevin Rue-Albrecht kevin.rue-albrecht@kennedy.ox.ac.uk


[Package iSEE version 1.0.1 Index]