output_list {iCNV} | R Documentation |
Generate human readable output from result calculated by iCNV_detection function
output_list(icnv_res, sampleid = NULL, CN = 0, min_size = 0)
icnv_res |
CNV inference result. Output from iCNV_detection() |
sampleid |
the name of the sample, same order as the input |
CN |
An indicator variable with value 0,1 for whether exact copy number inferred in iCNV_detection. 0 no exact CN, 1 exact CN. Type integer. Default 0. |
min_size |
A integer which indicate the minimum length of the CNV you are interested in. This could remove super short CNVs due to noise. Type integer. Default 0. Recommend 1000. |
output CNV list of each individual
icnv.output <- output_list(icnv_res=icnv_res0,sampleid=sampname_qc, CN=0)