getResults {gep2pep} | R Documentation |
CondSEA
or PathSEA
outputExtracts the results matrix from CondSEA
or PathSEA
output
getResults(analysis, collection)
analysis |
The output of either |
collection |
One of the names returned by
|
A 2-columns matrix including ESs and p-values (see details) for each pathway database and condition.
CondSEA, PathSEA
db <- loadSamplePWS() db <- as.CategorizedCollection(db) repo_path <- file.path(tempdir(), "gep2pepTemp") rp <- createRepository(repo_path, db) geps <- loadSampleGEP() buildPEPs(rp, geps) pgset <- c("(+)_chelidonine", "(+/_)_catechin") psea <- CondSEA(rp, pgset) getResults(psea, "c3_TFT") unlink(repo_path, TRUE)