rareCompare {genotypeeval} | R Documentation |
Comparator to rare variants. Rare is defined as 0.01 percent or less
rareCompare(x, gr, percent.h)
x |
myvcf of interest |
gr |
GRanges of gold comparator |
percent.h |
what percent higher hets than hom_alt? |
list with name, logical (passed or not), numeric (proportion hets in rare)