summarizeFlow {flowTime}R Documentation

Generate summary statistics for a flowSet

Description

Gates a sample to all yeast, then singlet, then doublets. Also calculates singlet to doublet ratio. Returns a list of data frames, e.g. output$singlets, output$doublets, etc.

Usage

summarizeFlow(flowset, channel = "FL1.A", gated = FALSE, ploidy = FALSE,
  moments = FALSE, only = FALSE)

Arguments

flowset

the flowSet to be summarized

channel

character which data channel should be summarized

gated

boolean is the data already appropriately gated?

ploidy

character does the flowSet contain haploid or diploid cells?

moments

boolean split the data into early, middle, and late moments?

only

character summarize only "singlet", "doublet", or all "yeast" cells, FALSE will return all

Value

data frame containing the specified summary statistics of the specified cell populations for each frame

Examples

plate1 <- read.flowSet(path = system.file("extdata", "ss_example",
package = "flowTime"), alter.names = TRUE)
summarizeFlow(plate1, channel = "FL1.A", gated = TRUE,
ploidy = "diploid", moments = FALSE, only = "yeast")


[Package flowTime version 1.4.0 Index]