ridgeplot {enrichplot}R Documentation

ridgeplot

Description

ridgeline plot for GSEA result

Usage

ridgeplot(x, showCategory = 30, fill = "p.adjust", core_enrichment = TRUE)

## S4 method for signature 'gseaResult'
ridgeplot(x, showCategory = 30, fill = "p.adjust",
  core_enrichment = TRUE)

ridgeplot.gseaResult(x, showCategory = 30, fill = "p.adjust",
  core_enrichment = TRUE)

Arguments

x

gseaResult object

showCategory

number of categories for plotting

fill

one of "pvalue", "p.adjust", "qvalue"

core_enrichment

whether only using core_enriched genes

Value

ggplot object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
x <- gseDO(geneList)
ridgeplot(x)

[Package enrichplot version 1.0.2 Index]