easyRNASeq AnnotParam accessors {easyRNASeq} | R Documentation |
These functions and generics define 'accessors' (to get and set values) for
AnnotParam
objects within the easyRNASeq package.
Implemented are:
datasource
type
datasource(object) ## S4 method for signature 'AnnotParam' type(x)
object |
An object derived from class |
x |
An object derived from class |
The value of the corresponding slot.
Nicolas Delhomme
The AnnotParam
class.
The type and organism generics are imported from the BSgenome
and
Biostrings
package, respectively.
library(curl) invisible(curl_download(paste0("https://github.com/UPSCb/UPSCb/raw/", "master/tutorial/easyRNASeq/Dmel-mRNA-exon-r5.52.gff3.gz"), "Dmel-mRNA-exon-r5.52.gff3.gz")) annot <- AnnotParam(datasource="Dmel-mRNA-exon-r5.52.gff3.gz") # get the datasource Parameter datasource(annot)