edgeR additional methods {easyRNASeq} | R Documentation |
This method extends the edgeR package by offering the functionality to plot the effect of the normalization factor.
## S4 method for signature 'DGEList,character,character' plotNormalizationFactors(obj = DGEList(), cond1 = character(1), cond2 = character(1))
obj |
An object of class |
cond1 |
A character string describing the first condition |
cond2 |
A character string describing the second condition |
none
Nicolas Delhomme
## Not run: ## create the object dgeList <- DGEList(counts,group) ## calculate the sie factors dgeList <- calcNormFactors(dgeList) ## plot them apply(combn(rownames(dgeList$samples),2), 2, function(co,obj){plotNormalizationFactors(obj,co[1],co[2])},dgeList) ## End(Not run)