Gene Relevance methods {destiny}R Documentation

Gene Relevance methods

Description

featureNames <- ... Can be used to set the gene names used for plotting (e.g. if the data contains hardly readably gene or transcript IDs)

Usage

## S4 method for signature 'GeneRelevance'
featureNames(object)

## S4 replacement method for signature 'GeneRelevance,characterOrFactor'
featureNames(object) <- value

## S4 method for signature 'GeneRelevance'
dataset(object)

## S4 replacement method for signature 'GeneRelevance'
dataset(object) <- value

Arguments

object

GeneRelevance object

value

A text vector (character or factor)

See Also

gene_relevance, Gene Relevance plotting

Examples

data(guo_norm)
gr <- gene_relevance(DiffusionMap(guo_norm))
featureNames(gr)[[37]] <- 'Id2 (suppresses differentiation)'
# now plot it with the changed gene name(s)


[Package destiny version 2.10.2 Index]