extractions {destiny}R Documentation

Extraction methods

Description

Extraction methods

Usage

## S4 method for signature 'DiffusionMap'
names(x)

## S4 method for signature 'DPT'
names(x)

## S4 method for signature 'DiffusionMap,character,missing'
x[[i, j, ...]]

## S4 method for signature 'DPT,character,missing'
x[[i, j, ...]]

## S4 method for signature 'DiffusionMap'
x$name

## S4 method for signature 'DPT'
x$name

Arguments

x

DiffusionMap or DPT object

i, name

Name of a diffusion component 'DCx', 'DPTx', 'Branch' or column from the data

j

N/A

...

ignored

Value

The names or data row, see respective generics.

See Also

Extract, names for the generics. DiffusionMap accessors, DiffusionMap methods, coercions for more methods

Examples

data(guo)
dm <- DiffusionMap(guo)
dm$DC1        # A diffusion component
dm$Actb       # A gene expression vector
dm$num_cells  # Phenotype metadata

dpt <- DPT(dm)
dm$Branch
dm$DPT1


[Package destiny version 2.10.2 Index]