dagLogo {dagLogo} | R Documentation |
plot sequence logo for test results
dagLogo(testDAUresults, type=c("diff", "zscore"), pvalueCutoff=0.05, namehash=NULL, font="Helvetica-Bold", textgp=gpar(), legend=FALSE, labelRelativeToAnchor=FALSE, labels=NULL)
testDAUresults |
output of |
type |
"diff" or "zscore" |
pvalueCutoff |
pvalue cutoff for logo plot |
namehash |
the hash table to convert rownames of test results to a single letter to be plotted in the logo |
font |
font for logo symbol |
textgp |
text parameter |
legend |
plot legend or not, default false. |
labelRelativeToAnchor |
plot label relative to anchor or not, default false. |
labels |
the labels in each position. |
none
Jianhong Ou
data("seq.example") data("proteome.example") bg <- buildBackgroundModel(seq.example, proteome=proteome.example, permutationSize=10) t <- testDAU(seq.example, bg) dagLogo(t)