proteome.example {dagLogo} | R Documentation |
the subset proteome of fruit fly
data(proteome.example)
An object of Proteome for fly subset proteome. The format is: A list with one data frame and an character.
proteome
'data.frame': 1406 obs. of 4 variables
type
'character': "UniProt"
The format of proteome is
ENTREZ_GENE
a character vector, records entrez gene id
SEQUENCE
a character vector, peptide sequences
ID
a character vector, Uniprot ID
LEN
a character vector, length of peptides
used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 7227 proteome <- prepareProteome(UniProt.ws) proteome@proteome <- proteome@proteome[sample(1:19902, 1406), ]
data(proteome.example) head(proteome.example@proteome) proteome.example@type