cytof_colorPlot {cytofkit} | R Documentation |
Plot the data with color-coded marker values
cytof_colorPlot(data, xlab, ylab, zlab, colorPalette = c("bluered", "spectral1", "spectral2", "heat"), limits = c(quantile(data[, zlab], 0.02), quantile(data[, zlab], 0.98)), pointSize = 0.5, alpha = 1, removeOutlier = TRUE)
data |
A dataframe containing the xlab, ylab and zlab. |
xlab |
The column name of data for x lab. |
ylab |
The column name of data for y lab. |
zlab |
The column name of data for z lab. |
colorPalette |
Color Palette. |
limits |
Range for z lab, defaults to existing min, and max set at 98th percentile value. |
pointSize |
Size of the point. |
alpha |
Transparency of point. 1 is opaque, 0 is completely transparent. |
removeOutlier |
If |
A ggplot object.
x <- c(rnorm(100, mean = 1), rnorm(100, mean = 3), rnorm(100, mean = 9)) y <- c(rnorm(100, mean = 2), rnorm(100, mean = 8), rnorm(100, mean = 5)) c <- rnorm(300, 10, 5) data <- data.frame(dim1 = x, dim2 = y, marker = c) cytof_colorPlot(data = data, xlab = "dim1", ylab = "dim2", zlab = "marker")