countMatrix {cummeRbund} | R Documentation |
Retrieve count values as gene by condition matrix
## S4 method for signature 'CuffData' countMatrix(object,fullnames=FALSE,sampleIdList) ## S4 method for signature 'CuffData' repCountMatrix(object,fullnames=FALSE,repIdList)
object |
An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature') |
fullnames |
A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels) |
sampleIdList |
A vector of sample names to subset the resulting matrix. |
repIdList |
A vector of replicate names to subset the resulting replicate matrix. |
None.
A feature x condition matrix of count values.
None
Loyal A. Goff
None.
data(sampleData) countMatrix(sampleGeneSet) repCountMatrix(sampleGeneSet)