CuffData-class {cummeRbund} | R Documentation |
A 'pointer' class for all information (FPKM, annotation, differential expression) for a given feature type (genes, isoforms, TSS, CDS). The methods for this function communicate directly with the SQL backend to present data to the user.
Objects can be created by calls of the form new("CuffData", DB, tables, filters, type, idField, ...)
.
DB
:Object of class "SQLiteConnection"
~~
tables
:Object of class "list"
~~
filters
:Object of class "list"
~~
type
:Object of class "character"
~~
idField
:Object of class "character"
~~
signature(x = "CuffData")
: ...
signature(object = "CuffData")
: ...
signature(object = "CuffData")
: Accessor for @DB slot
signature(object = "CuffData")
: Create a Full table (wide format) of differential expression information for all pairwise comparisons
signature(object = "CuffData")
: Internal method to create .rnk file. Should not be called directly
signature(object="CuffData")
: Access annotation data
None
Loyal A. Goff
None
None
showClass("CuffData")