genotypeAffy {crlmm} | R Documentation |
Assign diallelic genotypes at polymorphic markers
genotypeAffy(cnSet, SNRMin = 5, recallMin = 10, recallRegMin = 1000, gender = NULL, badSNP = 0.7, returnParams = TRUE, verbose = TRUE)
cnSet |
An object of class |
SNRMin |
See |
recallMin |
See |
recallRegMin |
See |
gender |
See |
badSNP |
See |
returnParams |
See |
verbose |
Logical. |
Wrapper for crlmm genotyping.
Returns logical. SNP genotypes and confidence scores are written to
ff_matrix
objects.
R.Scharpf