CNV.detail {conumee} | R Documentation |
Combine single probe values within detail regions.
CNV.detail(object, ...) ## S4 method for signature 'CNV.analysis' CNV.detail(object)
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Additional parameters ( |
The median intensity per detail region is calculated. Detail regions are defined using CNV.create_anno(detail_bed=)
CNV.analysis
object.
Volker Hovestadt conumee@hovestadt.bio
# prepare library(minfiData) data(MsetEx) d <- CNV.load(MsetEx) data(detail_regions) anno <- CNV.create_anno(detail_regions = detail_regions) # create object x <- CNV.fit(query = d['GroupB_1'], ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno) # modify object x <- CNV.bin(x) x <- CNV.detail(x) #x <- CNV.segment(x) # general information x show(x) # coefficients of linear regression coef(x) # show or replace sample name names(x) names(x) <- 'Sample 1'