CNV.detailplot_wrap {conumee} | R Documentation |
Create CNV plot for all detail regions.
CNV.detailplot_wrap(object, ...) ## S4 method for signature 'CNV.analysis' CNV.detailplot_wrap(object, set_par = TRUE, main = NULL, ...)
object |
|
... |
Additional paramters supplied to |
set_par |
logical. Use recommended graphical parameters for |
main |
character. Title of the plot. Defaults to sample name. |
This method is a wrapper of the CNV.detailplot
method to plot all detail regions.
NULL
.
Volker Hovestadt conumee@hovestadt.bio
# prepare library(minfiData) data(MsetEx) d <- CNV.load(MsetEx) data(detail_regions) anno <- CNV.create_anno(detail_regions = detail_regions) # create/modify object x <- CNV.segment(CNV.detail(CNV.bin(CNV.fit(query = d['GroupB_1'], ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno)))) # output plots CNV.genomeplot(x) CNV.genomeplot(x, chr = 'chr6') CNV.detailplot(x, name = 'PTEN') CNV.detailplot_wrap(x) # output text files CNV.write(x, what = 'segments') CNV.write(x, what = 'detail') CNV.write(x, what = 'bins') CNV.write(x, what = 'probes')