CNV.process {conumee} | R Documentation |
Given a case index, control indices, CNV.data, and CNV.anno, along with hints about sex chromosomes, call CN for a sample.
CNV.process(case, controls, CNdata, anno) ## S4 method for signature 'integer,integer,CNV.data,CNV.anno' CNV.process(case, controls, CNdata, anno)
case |
index of the case to process CN for. |
controls |
indices of the control samples. |
CNdata |
|
anno |
|
This method wraps most of conumee, and tries to call sex chromosomes properly using chrX/chrY information derived from the source GenomicRatioSet. For female subjects, chrY is dropped.
CNV.analysis
object.
Tim Triche, Jr. tim.triche@gmail.com