CNV.write {conumee} | R Documentation |
Output CNV analysis results as table.
CNV.write(object, ...) ## S4 method for signature 'CNV.analysis' CNV.write(object, file = NULL, what = "segments")
object |
|
... |
Additional parameters ( |
file |
Path where output file should be written to. Defaults to |
what |
character. This should be (an unambiguous abbreviation of) one of |
if parameter file
is not supplied, the table is returned as a data.frame
object.
# prepare library(minfiData) data(MsetEx) d <- CNV.load(MsetEx) data(detail_regions) anno <- CNV.create_anno(detail_regions = detail_regions) # create/modify object x <- CNV.segment(CNV.detail(CNV.bin(CNV.fit(query = d['GroupB_1'], ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno)))) # output plots CNV.genomeplot(x) CNV.genomeplot(x, chr = 'chr6') CNV.detailplot(x, name = 'PTEN') CNV.detailplot_wrap(x) # output text files CNV.write(x, what = 'segments') CNV.write(x, what = 'detail') CNV.write(x, what = 'bins') CNV.write(x, what = 'probes')