CNV.load {conumee} | R Documentation |
Prepare combined intensities from various input objects.
CNV.load(input, ...) ## S4 method for signature 'GenomicRatioSet' CNV.load(input, names = NULL) ## S4 method for signature 'MethylSet' CNV.load(input, names = NULL) ## S4 method for signature 'data.frame' CNV.load(input, names = NULL) ## S4 method for signature 'matrix' CNV.load(input, names = NULL) ## S4 method for signature 'numeric' CNV.load(input, names = NULL)
input |
Object of MethylSet class (minfi package), data.frame class, matrix class or numeric class. |
... |
Additional parameters ( |
names |
Vector specifying sample names. If not supplied, colnames are used. For MethylSet input, the first column of pData(input) matching 'name' (grep) is used. |
This method gathers combined intensities of the Methylated and Unmethylated signals for all supplied probes. Probe IDs must be supplied as row names or in a seperate column named 'ID_REF' or 'TargetID'. If column names match 'intensity', only those columns are used. Else, if column names match 'signal' or 'methylated', only those columns are used. Otherwise, all columns are used.
CNV.data
object.
Volker Hovestadt conumee@hovestadt.bio
library(minfiData) d <- CNV.load(MsetEx) d