orderContigsTSP {contiBAIT}R Documentation

Attempt to order contigs within linkage groups using travelling salesperson algorithm

Description

Attempt to order contigs within linkage groups using travelling salesperson algorithm

Usage

orderContigsTSP(linkageGroupReadTable, reps)

Arguments

linkageGroupReadTable

dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)

reps

Number of repetitions for he 2-opt TSP solver algorithm

Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered


[Package contiBAIT version 1.8.0 Index]