orderContigsTSP {contiBAIT} | R Documentation |
Attempt to order contigs within linkage groups using travelling salesperson algorithm
orderContigsTSP(linkageGroupReadTable, reps)
linkageGroupReadTable |
dataframe of strand calls (product of combineZeroDists or preprocessStrandTable) |
reps |
Number of repetitions for he 2-opt TSP solver algorithm |
list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered