filter_genesets {chipenrich} | R Documentation |
This function filters gene sets based on the genes that are present in a particular
locus definition. After determining which genes are present in both the GeneSet,
gs_obj
, and the LocusDefinition ldef_obj
, gene sets are filtered
by size with min_geneset_size
and max_geneset_size
.
filter_genesets(gs_obj, ldef_obj, min_geneset_size = 15, max_geneset_size = 2000)
gs_obj |
A valid GeneSet object |
ldef_obj |
A valid LocusDefinition object |
min_geneset_size |
An integer indicating the floor for genes in a geneset. Default 15. |
max_geneset_size |
An integer indicating the ceiling for genes in a geneset. Default 2000. |
An altered gs_obj
with changed set.gene
and all.genes
slots reflecting min_geneset_size
and max_geneset_size
after intersecting
with the genes present in the particular locus definition.