newfSet {chimera} | R Documentation |
A function to create a new fSet object
newfSet(fusionInfo = list(fusionTool = NA, UniqueCuttingPositionCount = 0, SeedCount = 0, RescuedCount = 0, SplicePattern = NA, FusionGene = NA, frameShift = NA), fusionLoc = GRangesList(), fusionRNA = DNAStringSet(), fusionGA = GAlignments())
fusionInfo |
A list of the fusion characteristics see fSet class slot fusionInfo |
fusionLoc |
A GRangesList encompassing the fusion break points |
fusionRNA |
A DNAStringSet encompassing the fusion transcript |
fusionGA |
A GAlignments encompassing the location of reads mapping on the fusion transcript |
An object of fSet class
Raffaele A Calogero
tmp <- newfSet() tmp