subsetGenome {casper}R Documentation

subsetGenome subsets an object of class annotatedGenome for a set of island IDs or chromosome names.

Description

~~ Methods for function subsetGenome in package casper ~~ Subset an annotatedGenome object by islands or chromosomes.

Usage

subsetGenome(islands, chr, genomeDB)

Arguments

islands

Vector of characters with the island IDs to retrieve from genome.

chr

Vector of characters with the names of chromosomes to retrieve from genome.

genomeDB

annotatedGenome object with genome to subset.

Methods

signature(islands = "character", chr = "missing", genomeDB = "annotatedGenome")

Subset annotatedGenome object by a set of island IDs.

signature(islands = "missing", chr = "character", genomeDB = "annotatedGenome")

Subset annotatedGenome object by chromosomes.


[Package casper version 2.14.0 Index]