segmentate {beadarraySNP} | R Documentation |
Use snapCGH package to perform segmentation
segmentate(object, method = c("DNACopy", "HMM", "BioHMM", "GLAD"), normalizedTo = 2, doLog = TRUE, doMerge = FALSE, useLair = FALSE, subsample = "OPA", alpha = 0.01)
object |
class |
method |
char, type of segmentation |
normalizedTo |
numeric |
doLog |
logical, perform transformation before segmentation, see |
doMerge |
logical, perform merging of close states |
useLair |
logical, Also segmentate on lair |
subsample |
factor |
alpha |
numeric, probability threshold to distinguish segments |
SnpSetIllumina object with elements observed, states and predicted
set in the AssayData
slot
Jan Oosting