build_hmm_annots {annotatr}R Documentation

A helper function to build chromHMM annotations for hg19 from UCSC Genome Browser.

Description

A helper function to build chromHMM annotations for hg19 from UCSC Genome Browser.

Usage

build_hmm_annots(genome = c("hg19"),
  annotations = annotatr::builtin_annotations())

Arguments

genome

The genome assembly.

annotations

A character vector of valid chromatin state annotatin codes.

Value

A GRanges object.


[Package annotatr version 1.6.0 Index]