build_gene_list_for_pathway {YAPSA} | R Documentation |
Build a gene list for a given pathway name
build_gene_list_for_pathway(in_string, in_organism)
in_string |
Name or description of the pathway |
in_organism |
Name of the taxon to be searched in |
A character vector of gene names
NULL ## Not run: species <- "hsa" gene_lists_meta_df <- data.frame( name=c("BER","NHEJ","MMR"), explanation=c("base excision repair", "non homologous end joining", "mismatch repair")) number_of_pathways <- dim(gene_lists_meta_df)[1] gene_lists_list <- list() for (i in seq_len(number_of_pathways)) { temp_list <- build_gene_list_for_pathway(gene_lists_meta_df$explanation[i], species) gene_lists_list <- c(gene_lists_list,list(temp_list)) } gene_lists_list ## End(Not run)