unrelatedIndividuals {VariantFiltering} | R Documentation |
This function is designed to create an object to deepen into the variants presented by a group of unrelated individuals
## S4 method for signature 'VariantFilteringParam' unrelatedIndividuals(param, svparam=ScanVcfParam(), BPPARAM=bpparam("SerialParam"))
param |
A |
svparam |
An instance of a |
BPPARAM |
An object of class |
This function requires as an input a VariantFilteringParam
class object built from an input multisample VCF file.
An object of class VariantFilteringResults
including functional annotations on all variants.
Dei M. Elurbe and R. Castelo
Elurbe D.M., Mila, M., Castelo, R. The VariantFiltering package, in preparation.
autosomalRecessiveHomozygous
autosomalRecessiveHeterozygous
autosomalDominant
deNovo
xLinked
VariantFilteringResults
## Not run: CEUvcf <- file.path(system.file("extdata", package="VariantFiltering"), "CEUtrio.vcf.bgz") param <- VariantFilteringParam(vcfFilename=CEUvcf) uInd <- unrelatedIndividuals(param) uInd ## End(Not run)