XMatrixList {TFBSTools} | R Documentation |
"XMatrixList"
The XMatrixList virtual class is a container for storing a collection of XMatrix objects. No object can be constructed directly from this virtual and it has three subclasses: PFMatrixList, PWMatrixList and ICMatrixList. Basically it is a SimpleList and is designed for manipulating the set of XMatrix objects as a whole.
## Constructors: PFMatrixList(..., use.names=TRUE) PWMatrixList(..., use.names=TRUE) ICMatrixList(..., use.names=TRUE) ## Accessor-like methods: ## S4 method for signature 'XMatrixList' ID(x) ## S4 method for signature 'XMatrixList' name(x) ## S4 method for signature 'XMatrixList' bg(x) ## S4 method for signature 'XMatrixList' tags(x) ## S4 method for signature 'XMatrixList' name(x) ## S4 method for signature 'XMatrixList' strand(x)
... |
The |
use.names |
A logical value. When TRUE, the names of the |
x |
A |
A XMatrixList
object.
Ge Tan
data(MA0003.2) data(MA0004.1) ## Construction of PFMatrixList pfmList <- PFMatrixList(pfm1=MA0003.2, pfm2=MA0004.1, use.names=TRUE) ## Construction of PFM<atrixList from list of PFMatrix pfmList <- do.call(PFMatrixList, list(pfm1=MA0003.2, pfm2=MA0004.1))