GE_matrix {StarBioTrek} | R Documentation |
GE_matrix creates a matrix of gene expression for pathways given by the user.
GE_matrix(DataMatrix, pathway)
DataMatrix |
gene expression matrix (eg.TCGA data) |
pathway |
pathway data as provided by getKEGGdata |
a matrix for each pathway ( gene expression level belong to that pathway)
list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],pathway=path)