plotting_cross_talk {StarBioTrek} | R Documentation |
plotting_matrix creates a matrix of gene expression for pathways given by the user.
plotting_cross_talk(DataMatrix, pathway, path_matrix)
DataMatrix |
gene expression matrix (eg.TCGA data) |
pathway |
pathway data as provided by getKEGGdata |
path_matrix |
output of the function matrix_plot |
a plot for pathway cross talk
mt<-plotting_cross_talk(DataMatrix=tumo[,1:2],pathway=path,path_matrix=list_path_plot)