eventOutcomeTranslate {SPLINTER} | R Documentation |
translates sequences, reports if NMD or NTC
eventOutcomeTranslate(seq1, genome, direction = FALSE, fullseq = TRUE)
seq1 |
GRangesList |
genome |
BSGenome object |
direction |
logical. Report direction of sequence change. |
fullseq |
logical. Output full AA sequence. |
list of translated sequences
Diana LOW
suppressMessages(library(BSgenome.Mmusculus.UCSC.mm9)) bsgenome<-BSgenome.Mmusculus.UCSC.mm9 translation_results<-eventOutcomeTranslate(compatible_cds,genome=bsgenome, direction=TRUE)