mismatchUtils {Rariant} | R Documentation |
Functions for processing position-specific base count tables (tallies) and extracting mismatches counts.
## low-level functions selectStrand(x, strand = c("both", "plus", "minus"), idx = 1:ncol(x)) seqDepth(x) callConsensus(counts, verbose = FALSE) mismatchCount(counts, consensus, depth = rowSums(counts))
x |
Input object |
strand |
Which strand to return? |
idx |
Index of bases to consider (leave as is) |
counts |
Count matrix |
verbose |
Show warnings |
consensus |
Consensus sequence |
depth |
Sequencing depth for counts |
.
comparativeMismatch