RTN.data {RTN} | R Documentation |
A minimum dataset used to demonstrate RTN main functions.
data(dt4rtn)
dt4rtn
List containing 6 R objects: 'gexp', 'gexpIDs', 'pheno', 'phenoIDs', 'hits' and 'tfs'.
The dataset consists of 6 R objects used in the RTN vignettes. It should be regarded as a toy example for demonstration purposes only, despite being extracted, pre-processed and size-reduced from Fletcher et al. (2013) and Curtis et al. (2012).
a named gene expression matrix with 250 samples (a subset from the Fletcher2013b package for demonstration purposes only).
a data.frame of characters with Probe-to-ENTREZ annotation.
a named numeric vector with differential gene expression data.
a data.frame of characters with probe ids matching a secundary annotation source (e.g. Probe-to-ENTREZ).
a character vector with genes differentially expressed.
a named vector with transcriptions factors.
Fletcher M.N.C. et al., Master regulators of FGFR2 signalling and breast cancer risk. Nature Communications, 4:2464, 2013.
Curtis C. et al., The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 486, 7403. 2012.
data(dt4rtn)