keggPathwayNames {ROntoTools}R Documentation

Obtain KEGG pathway titles

Description

Obtain KEGG pathway titles

Usage

keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)

Arguments

organism

organism code as defined by KEGG

updateCache

re-download KEGG data

verbose

show progress of downloading and parsing

Value

A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.

Author(s)

Calin Voichita and Sorin Draghici

See Also

keggPathwayGraphs

Examples


kpn <- keggPathwayNames("hsa")

# to update the pathway cache for human run:
# kpn <- keggPathwayNames("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwidth.

head(kpn)


[Package ROntoTools version 2.8.0 Index]