keggPathwayNames {ROntoTools} | R Documentation |
Obtain KEGG pathway titles
keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)
organism |
organism code as defined by KEGG |
updateCache |
re-download KEGG data |
verbose |
show progress of downloading and parsing |
A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.
Calin Voichita and Sorin Draghici
kpn <- keggPathwayNames("hsa") # to update the pathway cache for human run: # kpn <- keggPathwayNames("hsa", updateCache = TRUE) # this is time consuming and depends on the available bandwidth. head(kpn)