resource_reduce {RITAN}R Documentation

resource_reduce Merge terms across resources to reduce the number of redundant and semi-redundant terms

Description

resource_reduce Merge terms across resources to reduce the number of redundant and semi-redundant terms

Usage

resource_reduce(genesets = NULL, min_overlap = 0.8, verbose = TRUE)

Arguments

genesets

the input genesets to consider. May be from one or multiple resources.

min_overlap

terms that share at least this fraction of genes will be merged

verbose

if TRUE, print status and summary output

mutual_overlap

[TO DO; FEATURE NOT IMPLEMENTED] if TRUE, the overlap must be reciprocal in order to merge

Value

the list of terms, after merging to reduce redundnat and semi-redundant terms

Examples

require(RITANdata)
r <- resource_reduce( geneset_list$DisGeNet )


[Package RITAN version 1.4.2 Index]