DAVIDResult-class {RDAVIDWebService}R Documentation

class "DAVIDResult

Description

This class represents the most generic result obtained in the Database for Annotation, Visualization and Integrated Discovery (DAVID) website (see References).

Type

This class is a "Virtual" one.

Heirs

Slots

type

Object of class "character". Contains the name of DAVID's result.

Methods

show

signature(object="DAVIDResult"): returns a basic console output.

type

signature(object="DAVIDResult"): getter for type slot.

plot2D

signature(object="DAVIDResult", dataFrame="data.frame"): internal ggplot tile plot for gene/term cluster and annotation heirs.

Author(s)

Cristobal Fresno and Elmer A Fernandez

References

  1. The Database for Annotation, Visualization and Integrated Discovery (david.abcc.ncifcrf.gov)

  2. Huang, D. W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.; Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C. & Lempicki, R. A. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, SAIC-Frederick, Inc., National Cancer Institute at Frederick, MD 21702, USA., 2007, 35, W169-W175

  3. Huang, D. W.; Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, Clinical Services Program, SAIC-Frederick, Inc., National Cancer Institute at Frederick, Frede#rick, MD 21702, USA., 2009, 37, 1-13

  4. Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki, DAVID-WS: A Stateful Web Service to Facilitate Gene/Protein List Analysis Bioinformatics 2012 doi:10.1093/bioinformatics/bts251

See Also

Other DAVIDResult: plot2D, plot2D, plot2D, plot2D, plot2D, plot2D, type, type


[Package RDAVIDWebService version 1.18.0 Index]