DAVIDResult-class {RDAVIDWebService} | R Documentation |
This class represents the most generic result obtained in the Database for Annotation, Visualization and Integrated Discovery (DAVID) website (see References).
This class is a "Virtual
" one.
DAVIDGenes
: basic gene information
(ID, Name and Specie)
DAVIDCluster
: generic
Cluster result (Term or Gene).
DAVIDFunctionalAnnotationChart
: EASE results on
each Functional Category (see references).
DAVIDFunctionalAnnotationTable
: annotation for
each gene, no statistical analysis.
type
Object of class "character". Contains the name of DAVID's result.
show
signature(object="DAVIDResult")
:
returns a basic console output.
type
signature(object="DAVIDResult")
:
getter for type slot.
plot2D
signature(object="DAVIDResult",
dataFrame="data.frame")
: internal ggplot tile plot for
gene/term cluster and annotation heirs.
Cristobal Fresno and Elmer A Fernandez
The Database for Annotation, Visualization and Integrated Discovery (david.abcc.ncifcrf.gov)
Huang, D. W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.; Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C. & Lempicki, R. A. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, SAIC-Frederick, Inc., National Cancer Institute at Frederick, MD 21702, USA., 2007, 35, W169-W175
Huang, D. W.; Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, Clinical Services Program, SAIC-Frederick, Inc., National Cancer Institute at Frederick, Frede#rick, MD 21702, USA., 2009, 37, 1-13
Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki, DAVID-WS: A Stateful Web Service to Facilitate Gene/Protein List Analysis Bioinformatics 2012 doi:10.1093/bioinformatics/bts251
Other DAVIDResult: plot2D
,
plot2D
, plot2D
,
plot2D
, plot2D
,
plot2D
, type
,
type