categories {RDAVIDWebService} | R Documentation |
categories
for the different DAVIDWebService package class objectsObtain ids related information, according to the given function call (see Values).
categories(object) ## S4 method for signature 'DAVIDFunctionalAnnotationChart' categories(object) ## S4 method for signature 'DAVIDFunctionalAnnotationTable' categories(object)
object |
DAVIDWebService class object. Possible values are: DAVIDFunctionalAnnotationChart or DAVIDFunctionalAnnotationTable. |
according to the call, one of the following objects can be returned:
DAVIDFunctionalAnnotationChart |
factor vector of the "Category" column. |
DAVIDFunctionalAnnotationTable |
character vector with the name of available main categories in the dictionary/membership. |
Cristobal Fresno and Elmer A Fernandez
Other DAVIDFunctionalAnnotationChart:
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationChart-class
,
DAVIDFunctionalAnnotationTable
,
DAVIDFunctionalAnnotationTable
,
DAVIDFunctionalAnnotationTable
,
DAVIDGODag
, DAVIDGODag
,
DAVIDGeneCluster
,
DAVIDGeneCluster
, DAVIDGenes
,
DAVIDGenes
, DAVIDGenes
,
DAVIDTermCluster
,
DAVIDTermCluster
, as
,
as
, as
, ids
,
ids
, ids
, ids
,
ids
, initialize
,
initialize
, initialize
,
initialize
, initialize
,
initialize
, initialize
,
plot2D
, plot2D
,
plot2D
, plot2D
,
plot2D
, plot2D
Other DAVIDFunctionalAnnotationTable:
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationChart
,
DAVIDFunctionalAnnotationTable
,
DAVIDFunctionalAnnotationTable
,
DAVIDFunctionalAnnotationTable
,
DAVIDFunctionalAnnotationTable-class
,
DAVIDGODag
, DAVIDGODag
,
DAVIDGeneCluster
,
DAVIDGeneCluster
, DAVIDGenes
,
DAVIDGenes
, DAVIDGenes
,
DAVIDTermCluster
,
DAVIDTermCluster
, as
,
as
, as
,
dictionary
, dictionary
,
genes
, genes
,
genes
, genes
,
initialize
, initialize
,
initialize
, initialize
,
initialize
, initialize
,
initialize
, membership
,
membership
, plot2D
,
plot2D
, plot2D
,
plot2D
, plot2D
,
plot2D
, subset
,
subset
{ ##DAVIDFunctionalAnnotationChart example ##Load the Functional Annotation Chart file report for the input demo ##file 2, using data function. Then, create a DAVIDFunctionalAnnotationChart ##object using the loaded data.frame funChart2. data(funChart2) davidFunChart2<-DAVIDFunctionalAnnotationChart(funChart2) ##In Addition to the usual data.frame accessors, the user can inspect the ##main categories used in the analysis. categories(davidFunChart2) ##DAVIDFunctionalAnnotationTable example ##Load the Functional Annotation Table file report for the input demo ##file 1, using data function. Then, create a DAVIDFunctionalAnnotationTable ##object using the loaded data.frame annotationTable1. data(annotationTable1) davidFunTable1<-DAVIDFunctionalAnnotationTable(annotationTable1) ##Now, the user can inspect the main categories used in the analysis. categories(davidFunTable1) }