plotTrack-methods {R3CPET} | R Documentation |
This helper method can be used to display a genomic track for a certain location that contains the chromosome and the related interactions if any.
## S4 method for signature 'ChiapetExperimentData,GRanges' plotTrack(object, range)
object |
a |
range |
The genomic coordinates of the location to display |
a ggbio::track
object
Mohamed Nadhir Djekidel (nde12@mails.tsinghua.edu.cn)
petFile <- file.path(system.file("example",package="R3CPET"),"HepG2_interactions.txt") tfbsFile <- file.path(system.file("example",package="R3CPET"),"HepG2_TF.txt.gz") ## Not run: x <- ChiapetExperimentData(pet = petFile, tfbs= tfbsFile, IsBed = FALSE, ppiType="HPRD", filter= TRUE) gr <- GRanges("chr1",IRanges(start=100000,end=300000)) plotTrack(x,gr) ## End(Not run)