QDNAseqCopyNumbers {QDNAseq} | R Documentation |
Container for QDNAseq read count data
An object of this class contains the following elements:
copynumber
(numeric
) Corrected "count" signals in
[0,+∞) An object with only this field is created by
correctBins
().
segmented
(numeric
; optional) Segmented data in
[0,+∞), added by calling segmentBins
().
calls
(integer
; optional) Calls as -2=deletion,
-1=loss, 0=normal, 1=gain, 2=amplification, added by calling
callBins
().
probdloss
(numeric
; optional) Probabilities of
deletions in [0,1], added by calling callBins
().
probloss
(numeric
; optional) Probabilities of losses in
[0,1], added by calling callBins
().
probnorm
(numeric
; optional) Probabilities of normal
copy number in [0,1], added by calling callBins
().
probgain
(numeric
; optional) Probabilities of gains in
[0,1], added by calling callBins
().
probamp
(numeric
; optional) Probabilities of
amplifications in [0,1], added by calling callBins
().
The bin data (assay data) may contain missing values.
Ilari Scheinin