getBinAnnotations {QDNAseq} | R Documentation |
Gets bin annotation data for a particular bin size
Description
Gets bin annotation data for a particular bin size.
Usage
getBinAnnotations(binSize, genome="hg19", type="SR50",
path=getOption("QDNAseq::binAnnotationPath", NULL))
Arguments
binSize |
A numeric scalar specifying the width of the bins
in units of kbp (1000 base pairs), e.g. binSize=15 corresponds
to 15 kbp bins.
|
genome |
A character string specify the genome and genome version
to be used.
|
type |
A character string specify the experiment type, e.g. "SR50"
or "PE100".
|
path |
A character string specifying the path for the bin
annotation files. Defaults to downloading from the Internet, but can
also be a local path. Can also be defined by setting the
QDNAseq::binAnnotationPath option.
|
Details
Gets bin annotation data for a particular bin size
Value
Returns a AnnotatedDataFrame
object.
Author(s)
Ilari Scheinin
See Also
createBins
().
Examples
## Not run:
bins <- getBinAnnotations(15)
## End(Not run)
[Package
QDNAseq version 1.16.0
Index]