plot_clade {Pviz} | R Documentation |
Plot frequency of response for a single clade.
Description
Plot an axis and the frequency of response of a single selected clade.
Usage
plot_clade(restab, clade, sequence = NULL, from = 0,
to = max(restab$position), ...)
Arguments
restab |
A data.frame . The result of a peptide microarray analysis,
as returned by pepStat 's restab function.
|
clade |
A character . The clade to plot.
|
sequence |
An optional character or AAString . The
sequence of the ProteinSequenceTrack to plot. It should be the
sequence of the reference genome used in the peptideSet that
generated the restab .
|
from |
A numeric , the start coordinate of the plot.
|
to |
A numeric , the end coordinate of the plot.
|
... |
Aditional arguments to be passed to plotTracks .
|
Author(s)
Renan Sauteraud
See Also
restab
, plot_inter
, plotTracks
Examples
if(require(pepDat)){
data(restab)
plot_clade(restab, clade = c("A", "M"))
}
[Package
Pviz version 1.14.0
Index]