callLOH {PureCN}R Documentation

Get regions of LOH

Description

This function provides detailed LOH information by region.

Usage

callLOH(res, id = 1, arm.cutoff = 0.9)

Arguments

res

Return object of the runAbsoluteCN function.

id

Candidate solution to extract LOH from. id=1 will use the maximum likelihood solution.

arm.cutoff

Min fraction LOH on a chromosome arm to call whole arm events.

Value

Returns data.frame with LOH regions.

Author(s)

Markus Riester

See Also

runAbsoluteCN

Examples


data(purecn.example.output)
head(callLOH(purecn.example.output))


[Package PureCN version 1.10.0 Index]